Re: [Freesurfer] Problem, recon-all never finishes (it gets stuck)

2021-08-27 Thread Fischl, Bruce
: [Freesurfer] Problem, recon-all never finishes (it gets stuck) What kind of 7T image is it? Often they have terrible bias fields. Have you looked at the images with the ?h.orig.nofix surfaces? Also, remember to send your recon-all.log files. On 8/27/2021 10:43 AM, Samuel Paré wrote

Re: [Freesurfer] Problem, recon-all never finishes (it gets stuck)

2021-08-27 Thread Douglas N. Greve
What kind of 7T image is it? Often they have terrible bias fields. Have you looked at the images with the ?h.orig.nofix surfaces? Also, remember to send your recon-all.log files. On 8/27/2021 10:43 AM, Samuel Paré wrote: External Email - Use Caution Hi, I have been trying to process

[Freesurfer] Problem, recon-all never finishes (it gets stuck)

2021-08-27 Thread Samuel Paré
External Email - Use Caution Hi, I have been trying to process 7T images but for most of them, recon-all just never finishes. It seems like it just bugged at some point with no error messages. At first, I thought that it just needed more time, but once, I had them running for more