Re: [Freesurfer] Prevent masking of activity outside of brain

2013-08-13 Thread Douglas Greve
Run preproc-sess with -no-subcort-mask You may need to delete the mni305 files that are there so that it regenerates them. doug On 8/13/13 3:49 PM, Cesar Echavarria wrote: Hi Freesurfers, I want to look at activity in my subjects' retina for one of my experiments. I did volume-based analysi

[Freesurfer] Prevent masking of activity outside of brain

2013-08-13 Thread Cesar Echavarria
Hi Freesurfers, I want to look at activity in my subjects' retina for one of my experiments. I did volume-based analysis in freesurfer version 5.3 but I noticed that activity outside of the brain has been masked. Is there an option somewhere along the processing pipeline to prevent masking of acti