It is the raw value.
On 4/9/2020 7:08 PM, Hua, Jessica wrote:
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I had a question regarding the output for permutation.
perm.th40.abs.y.ocn.dat -- the average value of each subject in each cluster
Is this average value the raw value of each subject, or does th
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I had a question regarding the output for permutation.
perm.th40.abs.y.ocn.dat -- the average value of each subject in each cluster
Is this average value the raw value of each subject, or does this also account
for my covariates (age, sex, and ICV)?
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Thanks for your help! I downloaded the patch, and the analysis is now running.
Hopefully, I will not run into any other issues with the permutation.
Jessica
---
Jessica Hua, M.A.
Cognitive and Emotional Control Lab
Doctoral Candidate Clinical Psycho
did you download the patch as described here ("If You're Not at an
Organized Course")?
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm
On 4/6/2020 6:45 PM, Hua, Jessica wrote:
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Hi FreeSurfer Experts,
As recommended I ran th
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Hi FreeSurfer Experts,
As recommended I ran the following command:
mri_glmfit-sim --glmdir rh.volume.AgeSex.10.glmdir --perm 1000 3.0 abs
--perm-resid --cwp 0.05 --2spaces
And I got the following error message:
ERROR: Flag --perm-resid unrecognize
try this
mri_glmfit-sim --glmdir rh.volume.AgeSex.10.glmdir --perm 1000 3.0 abs
--perm-resid --cwp 0.05 --2spaces
On 4/4/2020 11:31 PM, Hua, Jessica wrote:
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HiFreeSurferExperts,
Reposting this message.
I am trying to correct for multiple comparisons by r
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Hi FreeSurfer Experts,
Reposting this message.
I am trying to correct for multiple comparisons by running a permutation for a
non-orthogonal design. Based on reading through the blog, I came up with the
following script:
mri_glmfit-sim --glmdir rh.
