Re: [Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
: Freesurfer support list Subject: Re: [Freesurfer] Path Problem Hi Dave that is pretty puzzling. The nu1.mnc is the output of the command that is failing, so I don't see why it complains that it doesn't exist. The same command: nu_correct -clobber ./tmp.mri_nu_correct.mni.246

Re: [Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
04 To: Freesurfer support list Subject: Re: [Freesurfer] Path Problem Hi Dave that is pretty puzzling. The nu1.mnc is the output of the command that is failing, so I don't see why it complains that it doesn't exist. The same command: nu_correct -clobber ./tmp.mri_nu_correct.mn

Re: [Freesurfer] Path Problem

2015-12-04 Thread Bruce Fischl
on behalf of Bruce Fischl > > Sent: 04 December 2015 13:36 > To: Freesurfer support list > Subject: Re: [Freesurfer] Path Problem > > HI David > > can you write to that dir? For example, does > > echo test > ./tmp.mri_nu_correct.mni.24767/test.dat > > > work

Re: [Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
2015 13:36 To: Freesurfer support list Subject: Re: [Freesurfer] Path Problem HI David can you write to that dir? For example, does echo test > ./tmp.mri_nu_correct.mni.24767/test.dat work properly (from the mri dir)? Also, please send us the entire recon-all.log so we can have a look che

Re: [Freesurfer] Path Problem

2015-12-04 Thread Bruce Fischl
HI David can you write to that dir? For example, does echo test > ./tmp.mri_nu_correct.mni.24767/test.dat work properly (from the mri dir)? Also, please send us the entire recon-all.log so we can have a look cheers Bruce On Fri, 4 Dec 2015, LIEWALD David wrote: Environment : Opensus

[Freesurfer] Path Problem

2015-12-04 Thread LIEWALD David
Environment : Opensuse 13.2 Freesurver Version 6 (Beta) Hi I hope you can help with this problem I'm using the version 6 Beta due to problems with license authentication. Freesurfer runs but bails out with a file not found error : Iteration 1 Fri Dec 4 09:38:57 GMT 2015 nu_correct -clobber