Re: [Freesurfer] Parcellation issue

2022-08-14 Thread Thomas Yeo
*To:* Freesurfer support list > *Subject:* Re: [Freesurfer] Parcellation issue > > > External Email - Use Caution > > Hi Reuben, > > What template are you trying to use? > > Regards, > Thomas > > On Tue, Aug 9, 2022 at 8:39 PM Addison,

Re: [Freesurfer] Parcellation issue

2022-08-14 Thread Addison, Reuben
The Yeo et al, 2011 template Reuben A. Get Outlook for iOS<https://aka.ms/o0ukef> From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Thomas Yeo Sent: Sunday, August 14, 2022 6:59:51 PM To: Freesurfer support list Subject: Re: [Freesurfer] Parcel

Re: [Freesurfer] Parcellation issue

2022-08-14 Thread Thomas Yeo
External Email - Use Caution Hi Reuben, What template are you trying to use? Regards, Thomas On Tue, Aug 9, 2022 at 8:39 PM Addison, Reuben wrote: > > > I want to use a different template apart from the MNI for my parcellation > (Yeo_JNeurophysiol11_FreeSurfer.zip). Below are

[Freesurfer] Parcellation issue

2022-08-09 Thread Addison, Reuben
I want to use a different template apart from the MNI for my parcellation (Yeo_JNeurophysiol11_FreeSurfer.zip). Below are the instructions given in the readme. My question is – do I need to run this code before Recon-all or after In terminal (ASSUMING shell is bash), a) "cd" to unzipped fold