Re: [Freesurfer] Pallidum too bright

2009-12-29 Thread Nick Schmansky
Lena, This message is not an error, and mri_ca_label should not stop. You can get a fixed mri_ca_label here: http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/ Nick On Tue, 2009-12-29 at 07:07 +, Lena Palaniyappan wrote: > While running recon-all –autorecon3 I got the following er

[Freesurfer] Pallidum too bright

2009-12-28 Thread Lena Palaniyappan
While running recon-all ­autorecon3 I got the following error message. mri_ca_label GCA sequential renormalization: label 28 not consistently computed. not using caudate to estimate GM means setting label Left_VentralDC based on Right_VentralDC = 1.17 x + 0 estimating mean gm scale to be 1.02 x