Re: [Freesurfer] PVC to calculate myelin maps

2021-06-01 Thread Douglas N. Greve
On 6/1/2021 10:19 AM, Marina Fernández wrote: External Email - Use Caution Thank you very much for your response Doug. What PVC method is most recommended to use to calculate the T1 / T2 ratio (RBV or MG)? I've never done it before. I usually use MG (this will only work for gray ma

Re: [Freesurfer] PVC to calculate myelin maps

2021-06-01 Thread Marina Fernández
External Email - Use Caution Thank you very much for your response Doug. What PVC method is most recommended to use to calculate the T1 / T2 ratio (RBV or MG)? And what value of PSF should we specify to calculate this ratio? To my knowledge, this is an acquisition related paramete

Re: [Freesurfer] PVC to calculate myelin maps

2021-05-31 Thread Douglas N. Greve
Yes, you can use PETsurfer. I would apply it to the ratio On 5/28/2021 10:25 AM, Marina Fernández wrote: External Email - Use Caution Dear experts, I want to calculate myelin maps using the ratio of T1w and T2w MRI images. I saw that the correction of partial volume effects can be u

Re: [Freesurfer] PVC to calculate myelin maps

2021-05-28 Thread Glasser, Matthew
urfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] PVC to calculate myelin maps External Email - Use Caution Hi Matt, Thank you very much for the quick answer. We have our data analyzed with another pipeline that also uses Freesurfer functions. For this reason we prefer to calculate myelin ma

[Freesurfer] PVC to calculate myelin maps

2021-05-28 Thread Marina Fernández
External Email - Use Caution Hi Matt, Thank you very much for the quick answer. We have our data analyzed with another pipeline that also uses Freesurfer functions. For this reason we prefer to calculate myelin maps outside of the HCP Pipelines. Do you think the way of calculati

Re: [Freesurfer] PVC to calculate myelin maps

2021-05-28 Thread Glasser, Matthew
External Email - Use Caution I would use the HCP Pipelines for this. Matt. From: on behalf of Marina Fernández Reply-To: Freesurfer support list Date: Friday, May 28, 2021 at 9:25 AM To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] PVC to calculate m

[Freesurfer] PVC to calculate myelin maps

2021-05-28 Thread Marina Fernández
External Email - Use Caution Dear experts, I want to calculate myelin maps using the ratio of T1w and T2w MRI images. I saw that the correction of partial volume effects can be used to create the maps (Shafee, Buckner & Fischl, 2015)*. Can I use the PVC functions of PetSurfer for