Re: [Freesurfer] PET tools in FS dev v6.0

2015-11-19 Thread Douglas Greve
r...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> > Subject: Re: [Freesurfer] PET tools in FS dev v6.0 > To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvar

Re: [Freesurfer] PET tools in FS dev v6.0

2015-11-19 Thread Pradeep
nd (itk_convert --inv-y --inv-x > > pet.mnc pet.nii). I couldn't find a good tool to convert directly > > form ECAT to NIFTI, but perhaps this conversion process interferes > > with the pet processing? > > > > Best, > > Jonathan

Re: [Freesurfer] PET tools in FS dev v6.0

2015-11-18 Thread Douglas N Greve
Message: 7 > Date: Mon, 28 Sep 2015 18:07:18 -0400 > From: Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] PET tools in FS dev v6.0 > To: freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvar

Re: [Freesurfer] PET tools in FS dev v6.0

2015-11-18 Thread Pradeep
to NIFTI, but perhaps this conversion > process interferes with the pet processing? > > Best, > Jonathan > > >> Message: 7 >> Date: Mon, 28 Sep 2015 18:07:18 -0400 >> From: Douglas N Greve >> Subject: Re: [Freesurfer] PET tools in FS dev v6.0 >> To

Re: [Freesurfer] PET tools in FS dev v6.0

2015-09-28 Thread Jonathan DuBois
7;t find a good tool to convert directly form ECAT to NIFTI, but perhaps this conversion process interferes with the pet processing? Best, Jonathan > Message: 7 > Date: Mon, 28 Sep 2015 18:07:18 -0400 > From: Douglas N Greve > Subject: Re: [Freesurfer] PET tools in FS dev

Re: [Freesurfer] PET tools in FS dev v6.0

2015-09-28 Thread Douglas N Greve
> Message: 13 > Date: Tue, 08 Sep 2015 14:34:11 -0400 > From: Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] PET tools in FS dev v6.0 > To: freesurfer@nmr.mgh.harvard.edu > <mailto:freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] PET tools in FS dev v6.0

2015-09-28 Thread Jonathan DuBois
fssub/epc_02/mri/gtmseg.lta Replacing 18 Pruning ctab done with seg vol maxFWHM = 3.28205 (voxels), PadThresh=0.0001, nPad=10 Computing auto mask Segmentation fault: 11 Message: 13 > Date: Tue, 08 Sep 2015 14:34:11 -0400 > From: Douglas N Greve > Subject: Re: [Freesurfer] PET tools in FS

Re: [Freesurfer] PET tools in FS dev v6.0

2015-09-23 Thread Bruce Fischl
Message: 13 Date: Tue, 08 Sep 2015 14:34:11 -0400 From: Douglas N Greve Subject: Re: [Freesurfer] PET tools in FS dev v6.0 To: freesurfer@nmr.mgh.harvard.edu Message-ID: <55ef2a23.3070...@nmr.mgh.harvard.edu> Content-Type: text/plain; charset=window

Re: [Freesurfer] PET tools in FS dev v6.0

2015-09-23 Thread Jonathan DuBois
= 3.28205 (voxels), PadThresh=0.0001, nPad=10 Computing auto mask Segmentation fault: 11 Message: 13 > Date: Tue, 08 Sep 2015 14:34:11 -0400 > From: Douglas N Greve > Subject: Re: [Freesurfer] PET tools in FS dev v6.0 > To: freesurfer@nmr.mgh.harvard.edu > Message-ID:

Re: [Freesurfer] PET tools in FS dev v6.0

2015-09-08 Thread Douglas N Greve
Yes there are both. For KM we have MRTM1 and MRTM2 so far. They are not well documented yet. 1. To start, run gtmseg --s subject This will take a couple of hours and produces some files needed for GTM PVC (which is used for GTM, MG, RBV). 2. You'd then register the PET to the anatomical with

[Freesurfer] PET tools in FS dev v6.0

2015-09-08 Thread Jonathan DuBois
Hi FS experts, In FS development package I see that there have been tools added for partial volume correction of PET data, but I was wondering if there were also kinetic modeling tools similar to those described in Doug's 2014 paper? If you could let me know what PET processing tools have been inc