Hi Adam, it might depend on which version you are running. I've been
working on it over the last year and made some changes related to
choroid plexus. The version that I have now does not merge CP with CSF.
You can check in your analysis by running
cd gtmdir/aux
mri_binarize --i seg.nii.gz --m
Hi,
Just want to bump this to the top now that the weekend is over!
Thanks for any insights about the CSF estimation,
Adam
On Fri, Oct 21, 2016 at 1:03 PM, Adam Martersteck
wrote:
> Thanks for replying Doug,
>
> Yes, I would like to use my own mask if the choroid plexus is included but
> *only
Thanks for replying Doug,
Yes, I would like to use my own mask if the choroid plexus is included but
*only* for Tau PET. There is high off-target binding of the new tau PET
ligand AV1451 (formerly called T807) in choroid plexus. I wanted to avoid
that high signal when estimating CSF.
I think chor
What do you mean? You have your own CSF segmentation and you want to use
that instead of the one created by gtmseg?
On 10/20/2016 11:32 AM, Adam Martersteck wrote:
> Hi FreeSurfer team,
>
> Hopefully Doug or someone familiar with the new PET PVC implementation
> can answer a few things I can't
Hi FreeSurfer team,
Hopefully Doug or someone familiar with the new PET PVC implementation can
answer a few things I can't seem to find on
http://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer or either of Doug's PVC
publications (2013 or 2016).
1) Is the choroid plexus included in the binarized the
