Re: [Freesurfer] Output of recon-all -all -openmp 8 does not show brainmask.mgz

2014-01-09 Thread Z K
u, 19 Dec 2013 15:27:11 + > Subject: Re: [Freesurfer] Output of recon-all -all -openmp 8 does not > show brainmask.mgz > > Dear Zeke, > Thank you for pointing in the right direction. As a reminder the problem > was that I was not getting the brainmask.mgz file, in the meantime I > t

Re: [Freesurfer] Output of recon-all -all -openmp 8 does not show brainmask.mgz

2014-01-09 Thread pablo najt
ate: Mon, 16 Dec 2013 17:18:32 -0500 > From: zkauf...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu; pablon...@hotmail.com > Subject: Re: [Freesurfer] Output of recon-all -all -openmp 8 does not show > brainmask.mgz > > Pablo, > > I need the recon-all.log file l

Re: [Freesurfer] Output of recon-all -all -openmp 8 does not show brainmask.mgz

2013-12-16 Thread Z K
tory) and talairach_avi (in > mri/transformations directory). > Thanks, > Pablo > > > Date: Fri, 13 Dec 2013 16:21:48 -0500 > > From: zkauf...@nmr.mgh.harvard.edu > > To: pablon...@hotmail.com > > CC: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Free

Re: [Freesurfer] Output of recon-all -all -openmp 8 does not show brainmask.mgz

2013-12-13 Thread Z K
Hello Pablo, Please send me the recon-all.log file for the subject and I will take a look. -Zeke On 12/13/2013 03:41 PM, pablo najt wrote: > Dear FS, > I am checking on the outputs of recon-all -all using the flag -openmp 8. > As I did with standard recon-all -all comand line I was trying to ch

[Freesurfer] Output of recon-all -all -openmp 8 does not show brainmask.mgz

2013-12-13 Thread pablo najt
Dear FS, I am checking on the outputs of recon-all -all using the flag -openmp 8. As I did with standard recon-all -all comand line I was trying to check brainmask.mgz, but there is not such file. Is there anything wrong with my outputs? Or I should be checking a different file? Thank you, Pablo