Bruce Fischl
Sent: Montag, 12. Januar 2015 14:51
To: Freesurfer support list
Subject: Re: [Freesurfer] Openmp option does not work in Ubuntu 12.04
yes, in 5.3 there is only openmp support in a couple of binaries. Those stages
are reached maybe 15 minutes into recon-all depending on your hardware
Subject: Re: [Freesurfer] Openmp option does not work in Ubuntu 12.04
yes, in 5.3 there is only openmp support in a couple of binaries. Those stages
are reached maybe 15 minutes into recon-all depending on your hardware.
cheers
Bruce
On Mon, 12 Jan 2015, Narayanan,
Krishnaprasad wrote:
> Hi Br
--Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Montag, 12. Januar 2015 14:30
To: Freesurfer support list
Subject: Re: [Freesurfer] Openmp option does not work in Ubuntu 12.04
Hi Krishnaprasad
wh
Freesurfer] Openmp option does not work in Ubuntu 12.04
Hi Krishnaprasad
what is your full recon-all command line? And how do you know it isn't working?
Have you tried running "top" during the mri_ca_register stage?
The upcoming (one of these months!) release will have much m
Hi Krishnaprasad
what is your full recon-all command line? And how do you know it isn't
working? Have you tried running "top" during the mri_ca_register stage?
The upcoming (one of these months!) release will have much more in the
way of openmp optimization
cheers
Bruce
On Mon, 12 Jan 2015
Hallo all,
I have installed freesurfer v5.3 on Ubuntu 12.04 LTS. The GCC version is 4.6. I
use the recon-all using -all and -openmp option. I observed that openmp does
not seem to have any effect in the execution of freesurfer. I verified the
installation of openmp using dpkg --status libgomp1
