I'm not sure what you mean/want. If you run preproc-sess with the
-mni305 flag, it will resample to mni305 space and mask out
non-subcortical structures
On 10/12/17 11:14 AM, Jan Willem Koten wrote:
Normalize to mni
Dear Doug,
We have a very simple question. In a first step we segmented br
Hi Jan,
Is the functional image already coregistered to the T1? If you have a
registration file, you could try:
mri_vol2vol --mov fstcmc.nii.gz --reg registrationfile --tal --talres 2 --o
fstcmc.mni305.2mm.nii.gz
.. to bring the functional image to MNI305. Are you planning to your restrict
yo
Normalize to mni
Dear Doug,
We have a very simple question. In a first step we segmented brains using the recon all command. Our functional pipeline created a „fstcmc.nii.gz“ file. We would like to do some subcortical analysis and need to perfrorm this in MNI 305 space. We also need the s
