Hi Bruce, returning back to this. I tried the same command on the tutorial
data set (bert):
tksurfer bert rh inflated
and I did not get the error about rh.sphere.reg surface not matching
rh.inflated that I got with my data, but I still have the same problem with
the tutorial data (bert). I see on
Great idea, I didn't try this on the tutorial data set. Will let you know.
Jim
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Cell: 575-571-8274
Email: jkk...@gmail.com
On Wed, Apr 27, 2011 at 5:38 PM, Bruce Fischl wrote:
> so tksurfer has never worked for you on any dataset? Have you tried it on
> one of the ones that we distribute?
so tksurfer has never worked for you on any dataset? Have you tried it on
one of the ones that we distribute? If it hasn't worked, we'll need to know
about your environment (what OS, what video card, are you running in a
virtual box, etc...)
cheers
Bruce
On Wed, 27 Apr 2011, jim kroger wrote:
No, I don't see anything, just black.
Thanks,
Jim
--
Cell: 575-571-8274
Email: jkk...@gmail.com
On Wed, Apr 27, 2011 at 4:52 PM, Bruce Fischl wrote:
> and do you see a hemisphere properly rendered or not?
>
>
> On Wed, 27 Apr 2011, jim kroger wrote:
>
> Hi Bruce, this is my first attempt
and do you see a hemisphere properly rendered or not?
On Wed, 27 Apr 2011, jim kroger wrote:
> Hi Bruce, this is my first attempt to see something in tksurfer. It's a step
> in the making edits to white matter. I will go through the tksurfer
> tutorial, but I noticed that when I start tksurfer, t
Hi Bruce, this is my first attempt to see something in tksurfer. It's a step
in the making edits to white matter. I will go through the tksurfer
tutorial, but I noticed that when I start tksurfer, there may be an error.
Here's the output, think this might be it? (I am using red hat on a 32 gig
Ram
is this in tksurfer? There have been issues with video card drivers, so
make sure your's are up to date. Have you been able to view any surfaces in
tksurfer?
On Mon, 25 Apr 2011, jim kroger wrote:
> HI Bruce, thanks so much for the reply. All of the surfaces we have needed
> to view to fix the
HI Bruce, thanks so much for the reply. All of the surfaces we have needed
to view to fix the Talairach (was OK), white matter, etc., have been there.
It's only when I tried to look at the inflated brain during the
WhiteMatterEdits
step that something seemed to be missing. I will look at tkmedit an
Hi Jim
Have you been able to view other surfaces in tksurfer? The situation you
describe sounds normal except for the display issue (e.g. The thalamus should
be interior to the white surface)
Cheers
Bruce
On Apr 22, 2011, at 12:28 PM, jim kroger wrote:
> Hello, I am following the sequence in
Hello, I am following the sequence in the "FreeSurfer Troubleshooting
Reconstruction Work Flow" instructions, and am at step 8,
FsTutorial/WhiteMatterEdits. It looks like the thalamus and corpus callosum
are included as white matter, and the pial surface surrounds some
subcortical structures. Assum
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