Re: [Freesurfer] NU_evaluate crash while running Longitudinal Analysis with FS 5.3

2013-07-04 Thread Salil Soman
Thank you Martin. Turns out that our cluster had crashed and killed the task due to hard drive space limitations. Its all fixed now and have been able to go through the tutorial at http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial for a single subject with 3 time points. One qu

Re: [Freesurfer] NU_evaluate crash while running Longitudinal Analysis with FS 5.3

2013-07-04 Thread Martin Reuter
Hi Sal, not sure why the nu correction is crashing for you. can you check how the FS/RZ_1484_POST_FS.long.RZ_1484_Base/mri/orig.mgz and rawavg.mgz look? Also make sure the talariach.xfm is correct in the template (base). Next time please send the recon-all.log file (from the subject's scripts

[Freesurfer] NU_evaluate crash while running Longitudinal Analysis with FS 5.3

2013-07-03 Thread Salil Soman
Hi, I have been trying to run the FS longitudinal analysis on a subject with 3 time points. I ran each time point thourgh FS, made the template, but when I run the last step I do not get mri/norm files and the output files state nu_evaluate: crashed while running mincmath (termination status = 768