[Freesurfer] Multiple comparison correction

2023-01-23 Thread David
External Email - Use Caution Hi Freesurfer experts, I'm very sorry to bother you, but I am very confused with the following questions: My experimental design includes two discrete factors: with three levels (d,m,h); gender (f, m), and two Nvariables So I can

Re: [Freesurfer] Multiple comparison correction

2022-04-21 Thread Douglas N. Greve
Do you mean the difference between the d,m,h classes? If so, it would be 1 1 -1 -1 0 0 (rest all 0s) 1 1  0  0 -1 -1 ... 0 0 1 1 -1 -1 ... On 4/14/2022 9:50 AM, David wrote: External Email - Use Caution Hi Freesurfer experts,     I'm very sorry to bother you, but I am very confused

[Freesurfer] Multiple comparison correction

2022-04-14 Thread David
External Email - Use Caution Hi Freesurfer experts, I'm very sorry to bother you, but I am very confused with the following questions: My experimental design includes two discrete factors: with three levels (d,m,h); gender (f, m), and two Nvariables So I can

Re: [Freesurfer] Multiple Comparison Correction, Paired T-Test

2019-07-29 Thread Greve, Douglas N.,Ph.D.
Have you seen this tutorial? https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm it uses permutation (which does not work with weighted least squares), but you could change it to use the old monte carlo stuff. On 7/29/19 2:15 PM, FAST Study wrote: > > Externa

Re: [Freesurfer] Multiple comparison correction on subcortical volume

2017-01-10 Thread Douglas N Greve
I would say yes, but I've seen plenty of pubs that do not correct. The bonferroni correction is fine. You could also try FDR (though on 4 points it might not make much sense). On 01/10/2017 01:47 PM, neuroimage analyst wrote: > Hi, > > I extracted thalamic, caudate, and putamen volume (left hem

[Freesurfer] Multiple comparison correction on subcortical volume

2017-01-10 Thread neuroimage analyst
Hi, I extracted thalamic, caudate, and putamen volume (left hemisphere), and cingulate thickness (right hemisphere) from freesurfer's parcellation. Then I compare these volumes and thickness across two groups using R and found significant differences in these measurements. Do I have to correct for

[Freesurfer] multiple comparison correction using monte carlo

2010-02-05 Thread Casper van Oers
Hi, I have performed a linear mixed model analysis on surface data in AFNI using SUMA, resulting in each vertex having a p value. I would like to perform a multiple comparison correction using freesurfer, as an FDR approach in AFNI is to stringent (individual vertex statistical thresholds are low)