Re: [Freesurfer] mideface: facemask not found

External Email - Use Caution I am sorry, I just realized my email makes no sense. I was following one of FreeSurfers webpages on how to use mideface program. It worked fine except one detail. The tutorial uses the argument "--facemask facemask.mgz", when I run the line it did

[Freesurfer] mideface: facemask not found

External Email - Use Caution I have been writing scripts with the mideface program. Her the exact line of code i am using. mideface --i $Anatfolder/${mprs[0]}_T1w.nii.gz --odir $defacefolder --o $defacefolder/bids/${mprs[0]}_desc-defaced_T1w.nii.gz --pics --facemask facemask.mgz

Re: [Freesurfer] Mideface for CT?

External Email - Use Caution I just tried to run mideface on a CT scan, and it failed; probably just needs some parameter adjustments. If you have an MRI scan for that same person, you can run mideface on that, then apply it to the CT scan. See the mideface wiki page. On 9/7/20

[Freesurfer] Mideface for CT?

External Email - Use Caution Hi all, I have found the mideface algorithm powerful for T1/T2 weighted MRI. I wonder if it has been verified on CT scans as well? Best regards, Qian QIAN CHU (he/him/his) | qian.chu@{mail.utoronto.ca, ae.mpg.de} | Website

Re: [Freesurfer] MiDeFace

mgh.harvard.edu Subject: Re: [Freesurfer] MiDeFace USE CAUTION: External Message. External Email - Use Caution The algorithm works by projecting the average face inward and outward. In which direction is the problem occurring? Can you send me the log file? On 5/18/2023 12:16 PM, Herma

Re: [Freesurfer] MiDeFace

External Email - Use Caution The algorithm works by projecting the average face inward and outward. In which direction is the problem occurring? Can you send me the log file? On 5/18/2023 12:16 PM, Hermann, Jacob wrote: External Email - Use Caution We have successfull

[Freesurfer] MiDeFace

External Email - Use Caution We have successfully run MiDeFace on our neuroimaging files and it seems like a great option for our purposes (user friendly, easy to implement). However, we have noticed that there are some facial features (nose and mouth) that do not get obstructed