Re: [Freesurfer] Medial orbitofrontal QA question

2013-03-19 Thread Bruce Fischl
> From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] > Sent: 19 March 2013 00:00 > To: Alice Burnett > Cc: freesurfer@nmr.mgh.harvard.edu; rahul desikan > Subject: Re: [Freesurfer] Medial orbitofrontal QA question > > Hi Alice, > > you might also see what Rahul (ccd) thinks

Re: [Freesurfer] Medial orbitofrontal QA question

2013-03-19 Thread Alice Burnett
nsider the environment before printing this email From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: 19 March 2013 00:00 To: Alice Burnett Cc: freesurfer@nmr.mgh.harvard.edu; rahul desikan Subject: Re: [Freesurfer] Medial orbitofrontal QA question Hi Alice, you

Re: [Freesurfer] Medial orbitofrontal QA question

2013-03-18 Thread Bruce Fischl
Hi Alice, you might also see what Rahul (ccd) thinks if you send an image. cheers Bruce On Mon, 18 Mar 2013, Alice Burnett wrote: Hi FreeSurfer experts, I have been working with a dataset we have run through FreeSurfer 5.0 and am interested in the medial orbitofrontal region (Desikan atlas

Re: [Freesurfer] Medial orbitofrontal QA question

2013-03-18 Thread Douglas N Greve
Hi Alice, I would check out whether autocorrection of the defects in that area were done properly. You create a segmentation of the defects with defect-seg. It might not be in 5.0, so I've attached it. It might not work properly in 5.0. If so, you'll have to download 5.2 (you can have two dif

[Freesurfer] Medial orbitofrontal QA question

2013-03-17 Thread Alice Burnett
Hi FreeSurfer experts, I have been working with a dataset we have run through FreeSurfer 5.0 and am interested in the medial orbitofrontal region (Desikan atlas). We have an unexpected surface area finding, so we want to rule out any systematic error in the generation of the area measurements.