Re: [Freesurfer] Measuring regional cortical thickness

2009-01-29 Thread Bruce Fischl
Hi Jeff, yes, you can manually edit in tksurfer using the "custom fill" tool. And to get statistics you can use mris_anatomical_status and pass it the .annot file with -a. cheers, Bruce On Thu, 29 Jan 2009, Jeff Sadino wrote: Hello, I would like to measure the cortical thickness for eac

[Freesurfer] Measuring regional cortical thickness

2009-01-29 Thread Jeff Sadino
Hello, I would like to measure the cortical thickness for each region. All I can find is how to do it for user-defined ROI's, but not for each auto-segmented region. Can anyone point me in the right direction? Also, can you manually add and subtract pixels from region labels from the surface