Re: [Freesurfer] Measuring Cortical Volume

2010-02-13 Thread Pedro Paulo de Magalhães Oliveira Junior
You said FS 3.0.5? Probably you should upgrade to current version. Cheers 2010/2/13, Jeff Sadino : > Hello, > I want to measure the volume of my groups' cortex, n=139, mostly males. I > am using fs 3.0.5. > > >From the aseg.stats file, lh + rh white matter is 548,000 and gray matter > is > 487,

Re: [Freesurfer] Measuring Cortical Volume

2010-02-12 Thread Bruce Fischl
Hi Jeff, usually the aseg overestimates the gray matter, I think because the manual segmentations it is based on also overestimate (they label voxels that are mostly CSF as gray), so I don't find the direction of the effect surprising. Both methods use partial volume correction to account for

[Freesurfer] Measuring Cortical Volume

2010-02-12 Thread Jeff Sadino
Hello, I want to measure the volume of my groups' cortex, n=139, mostly males. I am using fs 3.0.5. >From the aseg.stats file, lh + rh white matter is 548,000 and gray matter is 487,000, for a ratio of 1.1. I know the aseg.stats file is not a good place to go for gray matter volume, as it is usu