Are you talking about outliers across subject? Or across region? I would just
take the FS-supplied value instead of averaging the regions.
On 11/19/2020 2:14 AM, Stephanie K wrote:
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Hi Bruce,
Thanks for the prompt reply. It is my understanding that l_thickne
nmovie_qt)
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Stephanie K
Sent: Friday, November 20, 2020 6:25 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Mean thickness estimation {Disarmed}
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Hi Bruce,
No, I don’t think that
t; Cheers
>
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Stephanie K
> *Sent:* Thursday, November 19, 2020 4:19 PM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer] Mean thicknes
, 2020 4:19 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Mean thickness estimation {Disarmed}
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Hi Bruce,
Is it also necessary to remove outliers (eg. 3 SD from the mean) for
Freesurfer structural measures of MRI images that have been visually
mr.mgh.harvard.edu> *On Behalf Of *Stephanie K
> *Sent:* Thursday, November 19, 2020 2:14 AM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] Mean thickness estimation
>
>
>
> *External Email - Use Caution*
>
> Hi Bruce,
>
>
&
Hi Stephanie
I think that is always a good idea, unless for some reason it isn’t possible
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Stephanie K
Sent: Thursday, November 19, 2020 2:14 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Mean thickness
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Hi Bruce,
Thanks for the prompt reply. It is my understanding that l_thickness,
r_thickness and estimated intracranial volume are accurately measured.
Would I still need to identify and remove outliers if visual inspection of
the images has not been do
: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Mean thickness estimation
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Hi,
I want to estimate the mean cortical thickness. For this I have summed the
thickness across all 34 regions mapped to the Desikan-Killiany atlas. However,
I also have the
External Email - Use Caution
Hi,
I want to estimate the mean cortical thickness. For this I have summed the
thickness across all 34 regions mapped to the Desikan-Killiany atlas.
However, I also have the average mean thickness of left and right
hemispheres (direct output variables o
