Re: [Freesurfer] Matlab Runtime download error (on MacOS)

2021-11-08 Thread fsbuild
External Email - Use Caution Hello Stephanie, If you installed 7.2.0 using the Mac pkg installer, then FREESURFER_HOME is /Applications/freesurfer/7.2.0.  If you installed elsewhere however, then change FREESURFER_HOME in the command below to the appropriate path for your setup

[Freesurfer] Matlab Runtime download error

2021-11-08 Thread Stephanie Otto
External Email - Use Caution Greetings Freesurfer Team, I am working on a new Macbook with the M1 chip. So far, I've had little issue with installation (7.2.0) and running recon-all. I am trying to run the thalmic nuclei and brainstem segmentations in preparation for running TRACU

Re: [Freesurfer] matlab runtime error

2021-09-02 Thread Corinna Bauer
freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Corinna Bauer < > corinna...@gmail.com> > *Date: *Wednesday, September 1, 2021 at 4:58 PM > *To: *Mailing Freesurfer List > *Subject: *[Freesurfer] matlab runtime error > > *External Email - Use Caution

Re: [Freesurfer] matlab runtime error

2021-09-01 Thread Hoopes, Andrew
-boun...@nmr.mgh.harvard.edu on behalf of Corinna Bauer Date: Wednesday, September 1, 2021 at 4:58 PM To: Mailing Freesurfer List Subject: [Freesurfer] matlab runtime error External Email - Use Caution Hi all, I ran a few subjects successfully through7.1.1, but when I got to check the

[Freesurfer] matlab runtime error

2021-09-01 Thread Corinna Bauer
External Email - Use Caution Hi all, I ran a few subjects successfully through7.1.1, but when I got to check the surfs in freeview I get an error about the Matlab runtime libraries below. However, I already have those libraries and the 2014b runtime environment installed on my Ubu

Re: [Freesurfer] Matlab Runtime error line 334

2021-03-23 Thread Cleary, Matthew
rfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] Matlab Runtime error line 334 External Email - Use Caution Hi team, I’m wondering if I could please ask for help - I am trying to install fs_install_mcr R

Re: [Freesurfer] Matlab Runtime error line 334

2021-03-16 Thread Hoopes, Andrew
: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Cleary, Matthew Date: Friday, March 12, 2021 at 10:08 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Matlab Runtime error line 334 External Email - Use Caution Hi team, I’m wondering if I could please ask for help - I am

[Freesurfer] Matlab Runtime error line 334

2021-03-12 Thread Cleary, Matthew
External Email - Use Caution Hi team, I’m wondering if I could please ask for help - I am trying to install fs_install_mcr R2014b on a 2020 M1 chip MacBook. I’m encountering an error at the end, that goes as follows; inflating: sys/java/jre/maci64/jre/THIRDPARTYLICENSEREADME.tx

Re: [Freesurfer] Matlab runtime installation error for Freesurfer v7.1.0

2020-06-11 Thread Yann Quidé
l.com>> > Reply-To: Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu>> > Date: Thursday, June 11, 2020 at 06:16 > To: "freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu>" > mailto:freesurfer@nmr.mgh.harvard.edu>> > Subje

Re: [Freesurfer] Matlab runtime installation error for Freesurfer v7.1.0

2020-06-11 Thread Iglesias Gonzalez, Juan E.
06:16 To: "freesurfer@nmr.mgh.harvard.edu" Subject: [Freesurfer] Matlab runtime installation error for Freesurfer v7.1.0 External Email - Use Caution Hi team, I am trying to install fs_install_mcr R2014b, but encounter an error just at the end of it: mv: rename /var/

[Freesurfer] Matlab runtime installation error for Freesurfer v7.1.0

2020-06-11 Thread Yann Quidé
External Email - Use Caution Hi team, I am trying to install fs_install_mcr R2014b, but encounter an error just at the end of it: mv: rename /var/folders/1f/4_zl7p9n795c2yq1dgb3hvt4gq/T/tmp.Xvv7Ku4d/install-target/v84 to /Applications/freesurfer/7.1.0/MCRv84: Permission de

Re: [Freesurfer] matlab runtime error - Hippocampal subfield segmentation

2020-04-24 Thread Hoopes, Andrew
, April 24, 2020 at 4:03 PM To: FS Help Subject: [Freesurfer] matlab runtime error - Hippocampal subfield segmentation External Email - Use Caution Dear Freesurfer experts, I am having trouble installing matlab runtime to be used for hippocampal subfield segmentation. I run the code fol

[Freesurfer] matlab runtime error - Hippocampal subfield segmentation

2020-04-24 Thread Lab of Autism and Developmental Neuroscience, Lab of Autism and Developmental Neuroscience
External Email - Use Caution Dear Freesurfer experts, I am having trouble installing matlab runtime to be used for hippocampal subfield segmentation. I run the code following the instructions on the website, but nothing is installed. This is what happens: /home/alex/Documents/fre

Re: [Freesurfer] Matlab Runtime

2017-01-26 Thread Iglesias Gonzalez, Eugenio
Ciao Stefano, You have currently no permission to write in the FreeSurfer directory. Try: 1. sudo -s 2. Enter your password 3. Run the curl and tar commands as explained in the wiki Cheers, /Eugenio Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College L

[Freesurfer] Matlab Runtime

2017-01-26 Thread stdp82
Hi list,please see the error reported below.ThanksStefano curl "http://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2012bMAC.tar.gz"; -o "runtime2012b.tar.gz" % Total% Received % Xferd Average Speed TimeTime Time Current