Use $FREESURFER_HOME/subjects/fsaverage/mri/orig.mgz as the target when you are
using the 1mm (there is a mri2.mm folder for 2mm)
On 12/19/2019 11:34 AM, Benjamin Ineichen wrote:
External Email - Use Caution
Many thanks for your quick reply!
I tried your suggestion. I got the error fst
External Email - Use Caution
Many thanks for your quick reply!
I tried your suggestion. I got the error fstal unknown.
So I tried talres 1 instead of fstal 1:
mri_vol2vol --talres 1 --interp nearest --mov example.mgz --s 001.mgz
--regheader --o example.mni305.mgz
but got the err
in this case, I might try mri_vol2vol, something like
mri_vol2vol --fstal 1 --interp nearest --mov example.mgz --s subject
--regheader --o example.mni305.mgz
That is a linear transform. If you want a non-linear, I can walk you
through that too
On 12/18/19 10:13 AM, Benjamin Ineichen wrote:
>
>
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Dear Freesurfer experts,
I have a manual segmentation of a certain brain feature done in Freeview. I
want to pool these segmentations from different subjects to create some
kind of a heat map/probability map.
In order to do this, I assume I need to co
