Hi Doug,
I see what you mean now. mri_cor2label should do it. Thanks again.
Cheers,
-Morgan
Doug Greve wrote:
No, use mri_cor2label to create the label file. I think the 2nd
example matches what you want to do.
doug
Morgan Hough wrote:
Hi Doug,
Thanks for the ftp fix. I have downloaded
No, use mri_cor2label to create the label file. I think the 2nd example
matches what you want to do.
doug
Morgan Hough wrote:
Hi Doug,
Thanks for the ftp fix. I have downloaded these fine now.
I don't see a use case for making a label in mri_binarize's help. When
I project the volumes to s
Hi Doug,
Thanks for the ftp fix. I have downloaded these fine now.
I don't see a use case for making a label in mri_binarize's help. When I
project the volumes to surfaces I actually save them as nifti files so I
can keep using avwmaths++ when I want to. What I think I am missing now
is the w
Sorry, should be accessible now. To do what you need, you can just run
mri_binarize on the output (or input) of vol2surf. I've put an uptodate
copy of mri_binarize there too.
doug
Morgan Hough wrote:
Thanks Doug,
I am having some trouble downloading this but the tksurfer interface
suffices
Thanks Doug,
I am having some trouble downloading this but the tksurfer interface
suffices for now.
I would still be interested in making a label from a volumetric
projection as this is something I can foresee being useful for other
things as well. Is there anyway to do this after a mri_vol2
I have a relatively new program that does this. Actually, it is an old
program with a cryptic name (mri_cor2label). I've put a new (linux)
version here:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_cor2label
See the help.
I don't know why mri_mergelabels does not work.
Hi Morgan,
I think you can do it in the tksurfer drawing interface (click the "add
to existing label" button)
cheers,
Bruce
On Tue, 26 Jun 2007, Morgan Hough wrote:
Hi Bruce,
I have been using mri_vol2surf to project nifti volumes onto subject surfaces
but I am not sure I understand how to
mri_vol2surf should work to resample the mask to the surface. Make sure
to use nearest neighbor. Making it an actual label is a little bit
trickier, however, you can create an annotation with mris_seg2annot
doug
Bruce Fischl wrote:
Hi Morgan,
what format is your volume ROI in? I think D
Hi Morgan,
what format is your volume ROI in? I think Doug's mri_vol2surf will do
this. If you have it in our label format file, then just loading it into
tksurfer will work if all the vertex #s are -1 (it will sample it onto
the surface)
Bruce
On Thu, 24 May 2007, Morgan Hough wrote:
I was
I was wondering if I can make a cortical label from a volume ROI from
the commandline. I would like to extract thickness values from a region
defined in each subject's volume space. Thanks in advance.
Cheers,
-Morgan
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