That helped!
Thank you so much!
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Fischl, Bruce
Sent: Friday, September 18, 2020 6:31 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Make BEM with corrected brainmask
Try:
mris_expand
Try:
mris_expand lh.brainmask.surf 3 inner_skull
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Kadwani, Manorama
Sent: Friday, September 18, 2020 6:16 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Make BEM with corrected brainmask
I read that the option "-thic
behalf of Douglas Greve
Sent: Friday, September 18, 2020 11:01 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Make BEM with corrected brainmask
Try mris_expand
On 9/16/20 10:24 PM, Kadwani, Manorama wrote:
Thank you, I got a brain surface using the mri_binarize function.
Is the
,
Manorama
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
*Sent:* Wednesday, September 9, 2020 6:25 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] Make BEM with corrected
...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Wednesday, September 9, 2020 6:25 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Make BEM with corrected brainmask
I'm not sure, but you might be able to just create a surface from the brain
mask with
mri_binariz
I'm not sure, but you might be able to just create a surface from the
brain mask with
mri_binarize --i brainmask.mgz --min 0.5 --surf brainmask.surf
You can smooth it a bit if you add --surf-smooth 2
where 2 is the number of iterations (more for smoother)
Try that
On 9/9/2020 6:01 PM, Kadwani, M
Hi,
Why does the "mri_watershed" function create a new brainmask? Is there a way to
create BEM surfaces from an existing or already corrected brainmask?
I had manually edited the brainmask during recon-all process. After the
recon-all process completed, the pial surfaces looked good.
But when I
