, 26 June 2024 at 23:36
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] MRI watershed error
⚠ Caution: External sender
not sure, it might work
On 6/26/2024 2:21 PM, Gaurav Ambwani wrote:
External Email - Use Caution
Dear Freesurfer team,
In short I just wanted to know if it w
.
*From:* Gaurav Ambwani
*Sent:* Wednesday, June 26, 2024 2:12 PM
*To:* Freesurfer support list
*Subject:* Re: [Freesurfer] MRI watershed error
Dear Freesurfer team,
The issue with that is that on fsl I would need to skull
: Wednesday, June 26, 2024 2:12 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] MRI watershed error
Dear Freesurfer team,
The issue with that is that on fsl I would need to skull strip the image that I
want to input for the registration. The reference image doesn't have to be
skull str
eve
Sent: Tuesday, June 25, 2024 9:51 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] MRI watershed error
you can compute the registration with the skull-stripped image, and then apply
the registration to the whole head image
On 6/25/2024 12:31 PM, Gaurav Ambwani wrote:
June 24, 2024 9:50 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] MRI watershed error
Sorry, I'm not sure what the problem is that you are describing. I see
from the recon-all file that
MNI_freesurfer_T1.nii.gz is your input. What is that? Is that after skull
stripping?
om: Gaurav Ambwani
Sent: Tuesday, June 25, 2024 12:31 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] MRI watershed error
Dear Freesurfer team,
I can't put the whole head into FSL for registration, I have to put the skull
stripped version into FSL. I have to put in the skul
av Ambwani.
From: Gaurav Ambwani
Sent: Tuesday, June 25, 2024 12:31 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] MRI watershed error
Dear Freesurfer team,
I can't put the whole head into FSL for registration, I have to put the skull
stripped vers
rom: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: Monday, June 24, 2024 9:50 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] MRI watershed error
Sorry, I'm not sure what the problem is that you are describing. I see from the
recon-all file tha
Sorry, I'm not sure what the problem is that you are describing. I see
from the recon-all file that
MNI_freesurfer_T1.nii.gz is your input. What is that? Is that after skull
stripping? Why not just give it the full head?
On 6/20/2024 3:52 PM, Gaurav Ambwani wrote:
External Email - Us
External Email - Use Caution
Dear Freesurfer developers,
I took a 1mm T1 MRI of the MNI152 skull stripped it using HD brain extraction
tool in 3D slicer, and then I registered it in fsl to a skull stripped version
of a T1 weighted image of a Stroke patient (which I got from Open
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