Re: [Freesurfer] Loosing data when using mri_convert

2013-07-02 Thread Douglas N Greve
what is your command line? On 07/02/2013 11:41 AM, Ray, Siddharth wrote: > > Hi all, > > So I am trying to reorient my sagittal scans (with messed up labels) > to axial using mri_convert (to get right label), I am able to do so > but I am loosing some data (some slices). > > When I checked voxel

[Freesurfer] Loosing data when using mri_convert

2013-07-02 Thread Ray, Siddharth
Hi all, So I am trying to reorient my sagittal scans (with messed up labels) to axial using mri_convert (to get right label), I am able to do so but I am loosing some data (some slices). When I checked voxel-to-ras transform for the original and reorient image, they were different. How can I