Look at http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
if you want to compare all subjects, then you'll need to do this for all
subjects not just the ones you want to flip
On 03/28/2016 02:30 PM, Ajay Kurani wrote:
> Hello Freesurfer Experts,
>
>I processed all of my brains through freesurfer
You should use xhemireg. Just changing the sign of the x coordinate will
not be meaningful.
On 03/29/2016 12:49 PM, Ajay Kurani wrote:
> Hi Doug,
>I used the caudate surface I created as an example as I was testing
> the command out. I do not plan to use this command for the caudate.
> It
Hi Doug,
I used the caudate surface I created as an example as I was testing the
command out. I do not plan to use this command for the caudate. It just
happened to show the same issue as the earlier post (
https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=subject:%22\[Fre
hmmm, we don't have a caudate surface. How did you make it? mris_reverse
just changes the sign on the x coordinate. This might not show up
"properly" in freeview; it does not surprise me that it could appear to
be 1 voxel off. This was not the intended use of this program. xhemireg
will not hel
what do you mean by a voxel shift?
On 03/28/2016 04:03 PM, Ajay Kurani wrote:
> Hi Freesurfer Experts,
>In testing mris_reverse, there seems to be a voxel shift. In
> looking up other freesurfer utitlites I came across xhemireg and surfreg.
>
> https://mail.nmr.mgh.harvard.edu/pipermail/frees
Hi Freesurfer Experts,
In testing mris_reverse, there seems to be a voxel shift. In looking up
other freesurfer utitlites I came across xhemireg and surfreg.
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2014-September/040573.html
Does xhemireg or surfreg call out mris_reverse, causin
Hello Freesurfer Experts,
I processed all of my brains through freesurfer 6.0 dev for Linux and
warped the surfaces to standardized space. For a handful of subjects I
want to perform a left right flip of the cortical thickness files
(standardized space) for a group analysis. What is the best
