Re: [Freesurfer] Label numbers aparc.a2009s

2017-06-03 Thread Bruce Fischl
Hi Jürgen the FreeSurferColorLUT.txt file lists all the labels that we might use, not all the ones that we do use in any given parcellation, so it will certainly have ones that are not in any single parcellation. cheers Bruce On Sat, 3 Jun 2017, Juergen Haenggi wrote: Dear FS experts I hav

Re: [Freesurfer] Label numbers aparc.a2009s

2017-06-02 Thread Juergen Haenggi
Dear FS experts Please ignore my former email. the tool I used did not show the whole intensity range. sorry Cheers Jürgen - University of Zurich Dr. Jürgen Hänggi, Ph.D. Department of Psycholog

[Freesurfer] Label numbers aparc.a2009s

2017-06-02 Thread Juergen Haenggi
Dear FS experts I have a question wrt the label numbers in FreeSurferColorLUT.txt compared with those in aparc.a2009s+aseg.mgz. I noticed that the last ctx (GM) label in FreeSurferColorLUT.txt file is 12175 ctx_rh_S_temporal_transverse whereas in the aparc.a2009s+aseg.mgz file, the highest in