Re: [Freesurfer] Label files for the Cortical Ribbon

2010-06-12 Thread Bruce Fischl
Hi Tina, you can sample the surface labels into the volume using mri_label2vol. That is on either white or pial surface or filling the ribbon. cheers Bruce On Mon, 7 Jun 2010, Tina Jeon wrote: > Hello freesurfers! > > After creating some labeling files from aparc.a2005s.annot, I noticed that m

Re: [Freesurfer] Label files for the Cortical Ribbon

2010-06-08 Thread Doug Greve
How did you create the .label files? mri_label2vol (your last step) does not produce them. Maybe with mri_cor2label run on the output of mri_label2vol? doug On Mon, 7 Jun 2010, Tina Jeon wrote: > Hello freesurfers! > > After creating some labeling files from aparc.a2005s.annot, I noticed that

[Freesurfer] Label files for the Cortical Ribbon

2010-06-07 Thread Tina Jeon
Hello freesurfers! After creating some labeling files from aparc.a2005s.annot, I noticed that my sulci and gyri volumes generated from the .label files (i.e., after running mri_annotation2label and mri_label2vol) were only representing the outer layer of the white surface. Is there any way to g

[Freesurfer] Label files for the Cortical Ribbon

2010-06-07 Thread Tina Jeon
Hello all! After creating some labeling files from aparc.a2005s.annot, I noticed that my sulci and gyri volumes generated from the .label files (i.e., after running mri_annotation2label and mri_label2vol) were only representing the outer layer of the white surface. Is there any way to generate