Re: [Freesurfer] LGI ERROR: make_roi_paths did not complete successfully!

2014-01-31 Thread Marie Schaer
Hi Wanda, You should have this function in $FREESURFER_HOME/matlab, the same way you should have compute_lgi.m and many other matlab functions there. Are you sure that you are looking at the correct location and / or that you didn't delete it? Marie On Jan 31, 2014, at 11:32 AM, Wanda Truong

Re: [Freesurfer] LGI ERROR: make_roi_paths did not complete successfully!

2014-01-31 Thread Wanda Truong
Hi Marie, Yes, I'm using matlab R3013a. In $FREESURFER_HOME/matlab folder I don't have a file called SearchProjectionOnPial.m. Should I create it and paste the updated function? Thanks for your help!! Wanda On 30 January 2014 15:09, Marie Schaer wrote: > > Hi Wanda, > > I'm not sure to u

Re: [Freesurfer] LGI ERROR: make_roi_paths did not complete successfully!

2014-01-30 Thread Marie Schaer
Hi Wanda, I'm not sure to understand your problem. Do you get an error because of using matlab 2013? If yes, I'm not sure to understand whether you modified the SearchProjectionOnPial.m function properly. Can you download the updated function there: http://www.mail-archive.com/freesurfer@nmr.

[Freesurfer] LGI ERROR: make_roi_paths did not complete successfully!

2014-01-30 Thread Wanda Truong
Hello Marie, I am trying to conduct a local gyrification index analysis, however I am getting this error ERROR: make_roi_paths did not complete successfully! Which is the same as the one posted earlier by someone else: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-July/032203.html