Re: [Freesurfer] Issue with Freesurfer installation

2017-12-15 Thread Pruett, Scott
Thanks, Andrew. That seems to have done the trick! On Thu, Dec 14, 2017 at 9:43 PM, Hoopes, Andrew wrote: > Hi Scott, > > It looks like "/Users/scottpruett/sample-001.mgz" doesn’t exist because > your cp command never ran (you have to specify a destination). Try: > cp $FREESURFER_HOME/subjects/s

Re: [Freesurfer] Issue with Freesurfer installation

2017-12-14 Thread Hoopes, Andrew
Hi Scott, It looks like "/Users/scottpruett/sample-001.mgz" doesn’t exist because your cp command never ran (you have to specify a destination). Try: cp $FREESURFER_HOME/subjects/sample-001.mgz . best, Andrew On Dec 14, 2017, at 4:00 PM, Pruett, Scott mailto:brandon_pru...@brown.edu>> wrote:

[Freesurfer] Issue with Freesurfer installation

2017-12-14 Thread Pruett, Scott
I just recently followed the steps to install Freesurfer on my Mac. The installation initially seems to have gone fine, but when I try to test the installation by using the listed "Example 1: Convert the sample-001.mgz to nifti format," I get the following error: freesurfer-Darwin-OSX-sta