That file would be anything you want to rescale. So gtm.nii.gz would be
a candidate (as would an Muller-gartner PVCed volumes).
On 02/16/2017 03:32 PM, Anderson Napolitano wrote:
> I am so sorry about that Dr. Greve.
> The post I made earlier is reference from the following thread:
> On 02/16/20
I am so sorry about that Dr. Greve.
The post I made earlier is reference from the following thread:
On 02/16/2017 12:28 PM, Anderson Napolitano wrote:
>
> Thank you Dr. Greve. Just to clarify, the 'inputfile.nii.gz' file in
> the command:
>
> fscalc inputfile.nii.gz div value -o outputfile.nii
Hi Anderson, please include previous correspondence so that we know what
this refers to. thanks
On 02/16/2017 12:28 PM, Anderson Napolitano wrote:
>
> Thank you Dr. Greve. Just to clarify, the 'inputfile.nii.gz' file in
> the command:
>
> fscalc inputfile.nii.gz div value -o outputfile.nii.gz
>
Thank you Dr. Greve. Just to clarify, the 'inputfile.nii.gz' file in the
command:
fscalc inputfile.nii.gz div value -o outputfile.nii.gz
,is the gtm.nii.gz file generated after the command:
mri_gtmpvc --i pet.nii.gz --reg template.reg.lta --psf FWHM --seg gtmseg.mgz
--default-seg-merge --au
There is not a flag to do this, but it should be fairly easy. There will
be a file called aux/global.gmwmcsf.dat. This has the mean value average
over all GM, WM, and CSF voxels (after PVC). You can use this to scale
your data like
fscalc inputfile.nii.gz div value -o outputfile.nii.gz
You can
Hi Experts!
Quick question: is it possible to re-scale intensities relative to the full
brain atlas?
Details:
Per step 3 of the following tutorial:
https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer
I wanted to re-scale the the intensities relative to the full brain atlas. The
command:
Hi Experts!
Per step 3 of the following tutorial:
https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer
I wanted to re-scale the the intensities relative to the full brain atlas. The
command:
--no-rescale
removes scaling relative to the Pons and the command:
--rescale
rescales the intensit
