Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-16 Thread Ranjan Maitra
rd.edu > Sent: Wed, 15 Apr 2015 13:52:03 -0400 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 > > Ranjan, > > I installed Fedora21 onto a laptop. I then download and installed > freesurfer and, after installing a few basic pac

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-15 Thread Z K
>>> -Original Message- >>> From: ni...@nmr.mgh.harvard.edu >>> Sent: Tue, 14 Apr 2015 16:26:50 -0400 >>> To: freesurfer@nmr.mgh.harvard.edu >>> Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 >>> >>> Ranjan, >>>

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-15 Thread dgw
.edu >> Sent: Tue, 14 Apr 2015 16:26:50 -0400 >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 >> >> Ranjan, >> >> after downloading, confirm the integrity of the tarball by running >> md5sum on it. yo

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Ranjan Maitra
.edu > Sent: Tue, 14 Apr 2015 16:26:50 -0400 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 > > Ranjan, > > after downloading, confirm the integrity of the tarball by running > md5sum on it

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Nick Schmansky, MGH
4/14/2015 03:15 PM, Ranjan Maitra wrote: > >> Zeke, > >> > >> Thanks again! > >> > >>> -----Original Message- > >>> From: zkauf...@nmr.mgh.harvard.edu > >>> Sent: Tue, 14 Apr 2015 15:12:06 -0400 > >>> To: freesurfer

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Ranjan Maitra
gt;>> >>>> ~$ mri_convert sample-001.mgz test.mgh >>>> mri_convert sample-001.mgz test.mgh >>>> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ >>>> reading from sample-001.mgz... >>>> TR=7.25, TE=3.22, TI=600.00, fl

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Z K
TE=3.22, TI=600.00, flip angle=7.00 >>> i_ras = (-0, -1, -0) >>> j_ras = (-0, 0, -1) >>> k_ras = (-1, 0, 0) >>> writing to test.mgh... >>> >>> ~$ >>> >>> Best wishes, >>> Ranjan >>> >>>> -Origin

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Ranjan Maitra
Zeke, Thanks again! > -Original Message- > From: zkauf...@nmr.mgh.harvard.edu > Sent: Tue, 14 Apr 2015 15:12:06 -0400 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 > > Ranjan, > > Ok, the binaries app

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Z K
om: zkauf...@nmr.mgh.harvard.edu >> Sent: Tue, 14 Apr 2015 14:44:34 -0400 >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 >> >> Ranjan, >> >> What happens when you try to use the mri_convert binary? &g

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Ranjan Maitra
) j_ras = (-0, 0, -1) k_ras = (-1, 0, 0) writing to test.mgh... ~$ Best wishes, Ranjan > -Original Message- > From: zkauf...@nmr.mgh.harvard.edu > Sent: Tue, 14 Apr 2015 14:44:34 -0400 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Installing FreeSurf

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Z K
> Many thanks, > Ranjan > >> -Original Message- >> From: zkauf...@nmr.mgh.harvard.edu >> Sent: Tue, 14 Apr 2015 10:43:54 -0400 >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 >> >> Ranjan, >&g

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Ranjan Maitra
Hi, it is: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Many thanks, Ranjan > -Original Message- > From: zkauf...@nmr.mgh.harvard.edu > Sent: Tue, 14 Apr 2015 10:43:54 -0400 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Installing FreeSurf

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-14 Thread Z K
t: Fri, 10 Apr 2015 19:51:25 -0400 >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 >> >> Try using gunzip first. Then untarring. >> >> >>> On Apr 10, 2015, at 2:05 PM, Ranjan Maitra >>

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-13 Thread Ranjan Maitra
age- > From: zkauf...@nmr.mgh.harvard.edu > Sent: Fri, 10 Apr 2015 19:51:25 -0400 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Installing FreeSurfer on Fedora 21 > > Try using gunzip first. Then untarring. > > >> On Apr 10, 2015, at 2:05 PM, R

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-10 Thread Z K
Try using gunzip first. Then untarring. > On Apr 10, 2015, at 2:05 PM, Ranjan Maitra > wrote: > > Hi, > > I have a strange issue, trying to install the 64-bit tgz onto Fedora 21. > > So, I downloaded using wget: > > $ wget -c > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/fr