Re: [Freesurfer] Inquiry about Choi's striatum parcellations.

2014-01-27 Thread Douglas N Greve
To add to what Thomas said, I would use mri_label2vol whenever transferring segmentations or labels. In this case, probably it won't make much difference. doug On 01/27/2014 05:49 AM, Thomas Yeo wrote: > Hi Sooyun, > > To convert the Choi's parcellation to the MNI152 template from FSL, > you

Re: [Freesurfer] Inquiry about Choi's striatum parcellations.

2014-01-27 Thread Thomas Yeo
Hi Sooyun, To convert the Choi's parcellation to the MNI152 template from FSL, you should just use mri_vol2vol, rather than FIRST. The command is as follows: " mri_vol2vol --mov original_choi_MNI152_parcellation.nii.gz --targ $FSLDIR/data/standard/MNI152_T1_2mm_brain.nii.gz --regheader --o FSL_cho

[Freesurfer] Inquiry about Choi's striatum parcellations.

2014-01-27 Thread 조수연
p{margin:0;padding:0;} Hello, I'm a FreeSurfer beginner and would like to ask a question about Choi's stratium parcellations. I was doing a research to incoorporate the parcellations by Choi on my subjects' images to delve further to understand the distincitve characteristics of each parcels.