Re: [Freesurfer] InfantFS witg segfile exiting with errors

2021-07-05 Thread Fernanda Hansen P. de Moraes
External Email - Use Caution Thank you very much. It was the version of mri_binarize, and it is processing now. After that, I've got the following error: *error: could not find stat for lhCortex, lhCortexVol in /your/sub-CC00152AN04/work/sub-CC00152AN04/stats/brainvol.statsroot

Re: [Freesurfer] InfantFS witg segfile exiting with errors

2021-07-01 Thread Paul Wighton
External Email - Use Caution Hmm, it looks like the command `mri_binarize` isn't recognizing the `--noverbose` flag. I tested this in my env, and I'm not getting that ("ERROR: Option --noverbose unknown") error. Could it be that $FREESURFER_HOME is pointing to an older version of

[Freesurfer] InfantFS witg segfile exiting with errors

2021-07-01 Thread Fernanda Hansen P. de Moraes
External Email - Use Caution Dear FreeSurfer experts, I am trying to process some newborn subjects including the segfile. In both situations, including the mask file and using the --forceskullstrip flag I get the following error (log file attached): *lta_convert successful./hom

[Freesurfer] InfantFS witg segfile exiting with errors

2021-06-22 Thread Fernanda Hansen P. de Moraes
External Email - Use Caution Dear FreeSurfer experts, I am trying to process some newborn subjects including the segfile. In both situations, including the mask file and using the --forceskullstrip flag I get the following error (log file attached): *lta_convert successful./hom