Hi Douglas,
I've looked at the original images in freeview and they follow the correct
talairach coordinates. I've run mri_convert again and the files follow the
correct talairach coordinates. It appears this may have been a 'one-off' issue.
Will update after I autorecon everything.
- Bryan
How do you know the nifti files are correctly oriented to begin with?
doug
On 10/24/2013 07:07 PM, Chiu, Bryan (PHTH) wrote:
> Hi,
>
> I am working on a dataset using free surfer.
>
> I have NIFTII files which I am converting using mri_convert. Upon
> completion of mri_convert, the orientations of
Hi,
I am working on a dataset using free surfer.
I have NIFTII files which I am converting using mri_convert. Upon completion of
mri_convert, the orientations of the files are wrong. This likely leads to an
incorrect talairach (I was getting errors but used -notal-check) and leads to
an incorr
