Hello Bruce,
Thank you very much for this. It led me exactly to where I needed to look.
In regards to this specific subject, it ran through reconstruction with a
bad skullstrip but accurate surfaces. We then fixed the skullstrip and
reran autorecon 2 & 3, but then the bad surfaces appeared. To
Hi Jeff,
it's hard to sort out what happened as it looks like you invoked
recon-all over 50 times for this subject! In any case, the talairach.lta
was way, way off, but when I just reran mri_em_register it worked
perfectly, so I can't reconstruct what you did. Can you try running
recon-all -a
Hi Bruce,
Thank you very much for taking a look at this for us. I uploaded it to your
ftp server under the name JeffSadino_050089_S05.tar. About 70 of our
subjects are showing similar problems. It seems to be happening more
frequently in fs5 as compared to fs4. If you can find anything that wi
Hi jeff
Sorry, this slipped through the cracks. If you upload the dataset we will take
a look
Bruce
On Oct 5, 2011, at 8:32 PM, Jeff Sadino wrote:
> Hello FreeSurfer Experts,
>
> Does anyone have any ideas about how to salvage this data?
>
> Thank you very much!
> Jeff
>
> On Sun, Oct 2, 2
