Re: [Freesurfer] Import % crop

2012-12-17 Thread Douglas N Greve
yes, it should doug On 12/14/2012 07:43 PM, octavian lie wrote: > Dear Doug, > Thank you for your suggestions, > to be more clear, the original preresection volume was in old analyze > format (hdr/img), and was already processed through freesurfer, so I > have pre.mgz instead of pre.img. I do not

Re: [Freesurfer] Import % crop

2012-12-13 Thread Douglas N Greve
On 12/12/2012 09:42 AM, octavian lie wrote: > Dear All, > Excuse the basic nature of these quetions. I coregistered 2 analyze > volumes in SPM (pre and post resection MR scans for same patient) with > cost function masking. I imported the preresection scan in Freesurfer, > and processed it with

[Freesurfer] Import % crop

2012-12-12 Thread octavian lie
Dear All, Excuse the basic nature of these quetions. I coregistered 2 analyze volumes in SPM (pre and post resection MR scans for same patient) with cost function masking. I imported the preresection scan in Freesurfer, and processed it with recon -all. 1) What transform matrices should I multiply