Re: [Freesurfer] How to obtain cortical thickness in fsaverage space

2012-05-02 Thread Douglas N Greve
After running mri_glmfit-sim to get the clusters, there should be a file named something like cache.th20.abs.y.ocn.dat. This will have the thickness for each subject averaged over each cluster (a column for each cluster). doug On 05/02/2012 03:30 AM, ZhiLiangLong wrote: > Hi all: >After fin

Re: [Freesurfer] How to obtain cortical thickness in fsaverage space

2012-05-02 Thread Bruce Fischl
I don't think there's a difference - the thicknesses are the same in fsaverage and individual space cheers Bruce On Wed, 2 May 2012, ZhiLiangLong wrote: Hi all:    After finishing group analysis, how can i obtain the thickness value of each ROIs showing significant group-difference in fsaverag

[Freesurfer] How to obtain cortical thickness in fsaverage space

2012-05-02 Thread ZhiLiangLong
Hi all: After finishing group analysis, how can i obtain the thickness value of each ROIs showing significant group-difference in fsaverage space? That is to say, how i get the value of each ROIs which have been normalized to the fsaverage template. The method suggested in tutorials page(ht