Re: [Freesurfer] Hippocampal sufields

2017-06-19 Thread Iglesias Gonzalez, Eugenio
Dear Erik, As of today, we don’t have a subdivision of the molecular layer. An option would be to use some geometric/heuristic rules to subdivide the molecular layer, but we haven’t implemented anything like that. Cheers, /Eugenio Juan Eugenio Iglesias ERC Senior Research Fellow Translational Im

[Freesurfer] Hippocampal sufields

2017-06-19 Thread Erik Lindberg
Dear Freesurfer experts, I am currently running your new pipeline for hippocampal subfield segmentation. However the resolution on my MRI images is too bad for identifying specific cellular layers such as stratum moleculare. My preferred option would be not to divide the different subfields into

[Freesurfer] Hippocampal sufields in MNI templates

2015-07-13 Thread lorenzo pasquini
Dear freesurfer users,I was wondering: is there any way to get normalized ROIs for hippocampal subfields in MNI space? Is anything speaking against for example, running freesurfer with subcortical segmentation on an MNI template? cheers and kind regards, Lorenzo Pasquini_