Re: [Freesurfer] Hemodynamic Lag Shift

2018-04-03 Thread Sarah Cole
Please ignore my previous post. I was wrong on so many levels! Thanks S On Fri, Mar 30, 2018 at 8:34 AM, Sarah Cole wrote: > Hi Doug, > > Sure. I have attached an excel sheet. > I have averaged the signal magnitude across 16 blocks of objects, and 16 > blocks of scenes, separately. Each block

Re: [Freesurfer] Hemodynamic Lag Shift

2018-03-30 Thread Sarah Cole
Hi Doug, Sure. I have attached an excel sheet. I have averaged the signal magnitude across 16 blocks of objects, and 16 blocks of scenes, separately. Each block has 8 TRs (TR=2). The top plot is the data with the default -TR/2 delay. The bottom plot is the data with -2TR delay. In both plots, we

Re: [Freesurfer] Hemodynamic Lag Shift

2018-03-30 Thread Douglas Greve
not sure what you are trying to do. can you send a picture? the default lag is TR/2 On 3/29/18 2:30 PM, Sarah Cole wrote: Thanks, Doug. I added (-4s) delay and plotted the data but I got the same delay as no shift. Also I did (+4) delay and lost most of the activation. Do you have any reco

Re: [Freesurfer] Hemodynamic Lag Shift

2018-03-29 Thread Sarah Cole
Thanks, Doug. I added (-4s) delay and plotted the data but I got the same delay as no shift. Also I did (+4) delay and lost most of the activation. Do you have any recommendations? Thanks, Sarah On Wed, Mar 28, 2018 at 4:39 PM, Douglas N. Greve wrote: > You can use the -delay flag in mkanalys

Re: [Freesurfer] Hemodynamic Lag Shift

2018-03-28 Thread Douglas N. Greve
You can use the -delay flag in mkanalysis-sess doug On 03/28/2018 05:35 PM, Sarah Cole wrote: > Hi Doug, > > I have a block design experiment. After analyzing the data and > plotting the response magnitude across the TRs, we see that there is a > systematic lag in the response. For example, in

[Freesurfer] Hemodynamic Lag Shift

2018-03-28 Thread Sarah Cole
Hi Doug, I have a block design experiment. After analyzing the data and plotting the response magnitude across the TRs, we see that there is a systematic lag in the response. For example, in a 16s block (TR=2s), at TR-1 and TR-2 the response goes down and then starts rising from TR-3. This is cons