Re: [Freesurfer] Having Matlab portion run as compiled matlab

2011-07-19 Thread Bill Taylor
This is the proposed workflow and some latter parts are done with Matlab. I assist is masses of Matlab jobs using compiled Matlab and run thousands of jobs both in on center, on our campus and out in to other resources in the GRID. My problem is not how to run a compiled Matlab job, but how to in

Re: [Freesurfer] Having Matlab portion run as compiled matlab

2011-07-19 Thread B.T. Thomas Yeo
Hi Bill, you want to look at mcc (http://www.mathworks.com/help/toolbox/compiler/mcc.html ) Usually what works for me is something like: mcc -m -v matlab_file.m This will generate a console executable "matlab_file" --Thomas On Jul 19, 2011, at 3:02 PM, Bill Taylor wrote: > So I peaked in a

Re: [Freesurfer] Having Matlab portion run as compiled matlab

2011-07-19 Thread Bruce Fischl
Hi Bill, what portions are you talking about? recon-all shouldn't use any matlab. cheers Bruce On Tue, 19 Jul 2011, Bill Taylor wrote: > So I peaked in archive and did not get a hit. > > The situation is that the University of Wisconsin > Madison site license prohibits us running Matlab > in a c

[Freesurfer] Having Matlab portion run as compiled matlab

2011-07-19 Thread Bill Taylor
So I peaked in archive and did not get a hit. The situation is that the University of Wisconsin Madison site license prohibits us running Matlab in a cluster unless it is compiled. I am assisting a Neurology lab with having a Condor workflow which this time round will do both Matlab and FSL post