[Freesurfer] Group comparison with MD

2021-05-29 Thread Antti Cajanus
External Email - Use Caution Dear Freesurfer experts, I’m trying to do a group comparison of cortical mean diffusivity. The study subjects form 2 groups (demented vs. non-demented). I’ve run recon-all and dt_recon on all of my study subjects. My goal is to create a surface, tha

Re: [Freesurfer] group comparison issue

2014-06-25 Thread Douglas N Greve
So the mri_glmfit results are less significant than the QDEC results? That is a little surprising because the glmfit results will have a higher DOF. The contrast (gamma.mgh) should be the same. It may be that your FWHM increased (compare the fwhm.dat files). You can also run the two group anal

[Freesurfer] group comparison issue

2014-06-25 Thread melinda dora
Dear list, I have a question re group comparisons. I have one group factor with three levels. I have done group-wise comparisons with these groups using qdec (ie doing pairwise comparisons, as it only allows group comparisons between two groups as far as I am aware?) as well as using mri glm fi

[Freesurfer] Group comparison

2012-03-09 Thread Allie Rosen
Hi All, I am trying to compare controls to patients. There is an interaction between group and age (i.e. the aging pattern is different for both groups). I did an interaction contrast and this was significant in the same areas that were significant in the original comparison. I can't switch to a D

Re: [Freesurfer] Group comparison

2010-05-06 Thread Michael Harms
The data in aparc.stats contain surface area, gray matter volume, and average thickness for whole regions, and are not intended for surface display. If you want to analyze those regional values use 'aparcstats2table' and then import the data into your preferred statistical package for further ana

[Freesurfer] Group comparison

2010-05-06 Thread Rajagopalan, Venkateswaran
Dear All, I am sorry to post this message again. Since i am not able to find from the tutorial and archives what i need i am posting it. I want to compare cortical thickness values in each region from aparc.stats file between control and patients. I am wondering whether it is possible to compa

[Freesurfer] Group comparison -qdec clarification

2010-04-28 Thread Rajagopalan, Venkateswaran
Dear All, I want to perform group comparison of cortical thickness between my patient and control group. I read qdec tutorial regarding how to do this. I was little bit puzzled and not able to understand the following. Before creating qdec table of patient data, fsaverage was suggested to run,