[Freesurfer] getting started

2016-03-26 Thread david sandeman
Hi I am a neurosurgeon working with robotics I have recently purchased a new macbook pro, running version 10.11.3 of OS X El capitan, speficially to run free surfer and other sofrtware designed to enhance my 3D segmentation capability The downloads I have tried only allow me to load freeview aut

Re: [Freesurfer] getting started with ROI & labels

2013-03-27 Thread Bruce Fischl
Hi Fred the first thing to do is run recon-all on a good T1-weighted anatomical from each of your subjects. You can then use mri_label2label to map the labels from one subject onto another. good luck Bruce On Wed, 27 Mar 2013, Fred Lado wrote: Dear Freesurfers,I'm interested in using FS ide

[Freesurfer] getting started with ROI & labels

2013-03-26 Thread Fred Lado
Dear Freesurfers, I'm interested in using FS identified labels, such as Brodman areas in the anatomical volume, to measure a feature, say mean intensity in V1, in a second volume registered to the first. I'm new to the use of labels, so some advice on where to start would be appreciated. Thanks

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Paul Raines
eciate it.  ~Rayna~ From: Paul Raines [rai...@nmr.mgh.harvard.edu] Sent: Thursday, May 10, 2012 1:55 PM To: Trietsch, Rayna Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Getting started with Freesurfer on Windows Small unix lesson A period &q

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Trietsch, Rayna
urfer] Getting started with Freesurfer on Windows Small unix lesson A period "." is shortcut for the current directory "df" is a utility for seeing how much free space is left on a file system. Unless quotas are involved which I am pretty sure they are not on the VirtualBox i

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Bruce Fischl
, May 10, 2012 1:55 PM To: Trietsch, Rayna Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Getting started with Freesurfer on Windows Small unix lesson A period "." is shortcut for the current directory "df" is a utility for seeing how much free space is l

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Trietsch, Rayna
ciate it.  ~Rayna~ From: Paul Raines [rai...@nmr.mgh.harvard.edu] Sent: Thursday, May 10, 2012 1:55 PM To: Trietsch, Rayna Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Getting started with Freesurfer on Windows Small unix lesson A period

Re: [Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Paul Raines
Small unix lesson A period "." is shortcut for the current directory "df" is a utility for seeing how much free space is left on a file system. Unless quotas are involved which I am pretty sure they are not on the VirtualBox image distributed. At the Martinos Center quotas are involved with hom

[Freesurfer] Getting started with Freesurfer on Windows

2012-05-10 Thread Trietsch, Rayna
Hi, I am a research assistant and I'm new to Freesurfer. I am using Windows and downloaded the VirtualBox and Freesurfer. I was able to get through the steps on the website for "Testing Freesurfer". However, I get stuck when I am trying to download the sample data for the tutorials. In the dire

Re: [Freesurfer] Getting Started

2009-09-22 Thread Pedro Paulo de Magalhães Oliveira Junior
Try this: cd ~ vi .bashrc You wont see the .bashrc unless you use ls -a --- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom --- Novo Netfilter 3.2 www.Netfilter.com.br --- Novo Netfilter Small Business

[Freesurfer] Getting Started

2009-09-22 Thread Weisinger, Brian (NIH/OD) [E]
I must be really cpu challenged because I can't even seem to get this thing started. I am trying to perform basic set up right now. I have downloaded freesurfer so far and in the freesurfer setup and configuration section of the wiki I have been able to If using bash or sh, type: export FREES

Re: [Freesurfer] Getting started with tutorial data.

2007-02-20 Thread Nick Schmansky
John, I'm wondering if you may have reached a 2GB limit somewhere. Can you attempt to download the file using the ftp method? Or if you tried that originally, maybe try the web browser method. Nick On Tue, 2007-02-20 at 14:17 +, McLean John (NHS Greater Glasgow & Clyde) wrote: > Hi, > > I

[Freesurfer] Getting started with tutorial data.

2007-02-20 Thread McLean John (NHS Greater Glasgow & Clyde)
Hi, I am new to Freesurfer and i'm hoping to learn how to use it by working through the tutorial data. I have installed FS correctly and ran recon-all -s bert -autorecon1 This completed without any errors. When i downloded the tutorial data: (buckner_data-tutorial_subjs.tar.gz) i noticed t