Hi Shani, it looks like your commands are right. How are you judging
that the mask is thicker? What is the resolution of the DTI volume? When
you binarize in a coarser space, you'll naturally not get it to line up
with the surface, and the binary mask will naturally be thicker.
doug
On 02/21/
Dear freesurfers
I'm using bbregister and mri_surf2surf to transform intermediate cortical
surfaces and mid surfaces normals to diffusion space.
Next I'm trying to generate volumes from these surfaces (in the same
diffusion space), however the generated volumes are much thicker then the
generated
