Re: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask

2022-03-21 Thread Begüm Cerrahoğlu
uesday, March 15, 2022 at 5:26 AM > *To: *freesurfer@nmr.mgh.harvard.edu > *Subject: *[Freesurfer] Gcut error: gcutted brain is much smaller than > the mask > > *External Email - Use Caution* > > Dear developers, > I am trying to clean up the extra dura left a

Re: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask

2022-03-16 Thread Hoopes, Andrew
Begüm Cerrahoğlu Date: Tuesday, March 15, 2022 at 5:26 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask External Email - Use Caution Dear developers, I am trying to clean up the extra dura left after skullstripping. Watershed

[Freesurfer] Gcut error: gcutted brain is much smaller than the mask

2022-03-15 Thread Begüm Cerrahoğlu
External Email - Use Caution Dear developers, I am trying to clean up the extra dura left after skullstripping. Watershed parameter does not prove to be much helpful and when I try gcut I get the error below. I checked the release notes of freesurfer 5.1 and mri_gcut is not run by