Re: [Freesurfer] Fwd: tralairach error when recon-all

2010-05-07 Thread Bruce Fischl
oops, I mean before they were converted to analyze? On Thu, 6 May 2010 elsh0...@umn.edu wrote: > > > - > Hello all, > I had two kind of files ( img & hdr). I used fslchfiletype command to > create nii.gz files. img and hdr files replaced by nii.gz files. I used > mri_convert command to create 001

Re: [Freesurfer] Fwd: tralairach error when recon-all

2010-05-07 Thread Bruce Fischl
it's because analyze doesn't store orientation information, so your images are probably incorrectly oriented. Can you get access to the files in a format before they were converted to dicom? cheers Bruce On Thu, 6 May 2010 elsh0...@umn.edu wrote: > > > - > Hello all, > I had two kind of files

[Freesurfer] Fwd: tralairach error when recon-all

2010-05-06 Thread elsh0029
- Hello all, I had two kind of files ( img & hdr). I used fslchfiletype command to create nii.gz files. img and hdr files replaced by nii.gz files. I used mri_convert command to create 001.mgz files and I did. Now, when I'm running recon-all for my data it exits with error: ERROR: talairach_a