Re: [Freesurfer] Fwd: trac-all -path error

2016-05-20 Thread Anastasia Yendiki
Hi Elijah - Since the error occurs in the CST, is any of the brainstem cut off for this subject? It's hard to tell from the screenshot, but the field of view seems a bit cropped inferiorly. Best, a.y On Thu, 5 May 2016, Elijah Mak wrote: > Dear Anastasia Yendiki, > I ran into a hitch while ru

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-10 Thread Anastasia Yendiki
are poor and lo res, making this realignment difficult  thanks again! JOn - Original Message - From: "Anastasia Yendiki" To: "Jon Wieser" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, February 6, 2014 3:16:16 PM Subject: Re: [Freesurfer] Fwd: trac-all -path

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-10 Thread Jon Wieser
aking this realignment difficult  thanks again! JOn - Original Message - From: "Anastasia Yendiki" To: "Jon Wieser" Cc: freesurfer@nmr.mgh.harvard.edu Sent: Thursday, February 6, 2014 3:16:16 PM Subject: Re: [Freesurfer] Fwd: trac-all -path  error We've gene

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-06 Thread Anastasia Yendiki
from the BBR resitration. I looked at the flirt >> registration. it looks OK. >> should I rerun tracula using only the flirt registration? >> Jon >> >> ----- Original Message ----- >> From: "Anastasia Yendiki" >> To: "Jon Wieser" &

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-06 Thread Anastasia Yendiki
t; Jon > > - Original Message - > From: "Anastasia Yendiki" > To: "Jon Wieser" > Cc: "freesurfer" > Sent: Thursday, February 6, 2014 11:00:25 AM > Subject: Re: [Freesurfer] Fwd: trac-all -path error > > > So there's your culprit. You n

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-06 Thread Jon Wieser
: "Anastasia Yendiki" To: "Jon Wieser" Cc: "freesurfer" Sent: Thursday, February 6, 2014 11:00:25 AM Subject: Re: [Freesurfer] Fwd: trac-all -path error So there's your culprit. You need to fix the intra-subject (diffusion-to-T1) registration. Did you use flirt or

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-06 Thread Anastasia Yendiki
ginal Message - > From: "Anastasia Yendiki" > To: "Jon Wieser" > Cc: freesurfer@nmr.mgh.harvard.edu > Sent: Wednesday, February 5, 2014 6:35:12 PM > Subject: Re: [Freesurfer] Fwd: trac-all -path error > > > Hi Jon - You need to look at the aparc+aseg

Re: [Freesurfer] Fwd: trac-all -path error

2014-02-05 Thread Anastasia Yendiki
ssing in > the area of the left ILF. > I have attached the files. can you take a look at them? > Thanks > JOn > > - Original Message - > From: "Anastasia Yendiki" > To: "Jon Wieser" > Cc: "freesurfer" > Sent: Friday, Januar

Re: [Freesurfer] Fwd: trac-all -path error

2014-01-22 Thread Jon Wieser
quot;Jon Wieser" Cc: "freesurfer" Sent: Friday, January 10, 2014 6:15:23 PM Subject: Re: [Freesurfer] Fwd: trac-all -path error Hi Jon - Have you checked the brain mask and aparc+aseg for this subject? Anything missing there that might affect the left ILF? a.y On Wed, 8 Ja

Re: [Freesurfer] Fwd: trac-all -path error

2014-01-10 Thread Anastasia Yendiki
Hi Jon - Have you checked the brain mask and aparc+aseg for this subject? Anything missing there that might affect the left ILF? a.y On Wed, 8 Jan 2014, Jon Wieser wrote: > > Dear freesurfer experts > I'm getting the following error when runing trac-all -c dmrirc_single_subject > -path > > >

Re: [Freesurfer] Fwd: trac-all -path error

2014-01-10 Thread Jon Wieser
dmri_paths is producing a segmentation fault. How can I fix this? thanks JOn - Original Message - From: "Jon Wieser" To: "freesurfer" Sent: Wednesday, January 8, 2014 11:54:55 AM Subject: [Freesurfer] Fwd: trac-all -path error Dear freesurfer experts I'm ge