Hi Giacomo,
all the freesurfer commands are stored in the subject's recon-all.log
file. You should be able to find the mri_ca_label command in there and
modify it.
cheers
Bruce
On Wed, 14 Oct 2009, Giacomo Mandruzzato wrote:
> Thank you for the answer but sorry, I don't know how use mri_ca_lab
Thank you for the answer but sorry, I don't know how use mri_ca_label
function!
I have aparc+aseg.mgz volume segmentation and I would have a probabilistic
segmentation of gray matter cortical in ctx.mgz file.
How can I do?
I am a beginner freesurfer user!
best
Giacomo
2009/10/14 Bruce Fischl
>
Hi Giacomo,
we don't write out the probabilities by default. To get them you would
need to add -write_probs to the mri_ca_label command
line (you can find it in recon-all.log for each subject).
cheers
Bruce
On Wed, 14 Oct
2009, Giacomo Mandruzzato wrote:
> -- Forwarded message --
-- Forwarded message --
From: Giacomo Mandruzzato
Date: 2009/10/14
Subject: probabilistic segmentation of gray matter
To: freesurfer@nmr.mgh.harvard.edu
Hi,
I have a question about a probabilistic segmentation of gray matter with
freesurfer. How can I do it?
if I binarize like t
