that will not change the intensities at all. It is probably just a
display issue. Try changing the brightness/contrast. The artifact might
cause problems later on, but this is not an issue I think
doug
On 06/03/2013 02:20 PM, Erin Browning wrote:
> We use:
>
> mri_convert N1029-anat+orig.BRIK
We use:
mri_convert N1029-anat+orig.BRIK freesurfer/mri/orig/001.mgz
where freesurfer is our freesurfer subject folder.
On Mon, Jun 3, 2013 at 1:18 PM, Douglas N Greve
wrote:
> what is your mri_convert command line?
>
> On 06/03/2013 02:11 PM, Erin Browning wrote:
> > Hi everyone--
> >
> > We
what is your mri_convert command line?
On 06/03/2013 02:11 PM, Erin Browning wrote:
> Hi everyone--
>
> We have a series of scans with an hyperintense artifact cutting
> through the temporal and frontal lobe. When we run mri_convert to
> convert from AFNI .BRIK files to .mgz fles, the results lo
Hi everyone--
We have a series of scans with an hyperintense artifact cutting through the
temporal and frontal lobe. When we run mri_convert to convert from AFNI
.BRIK files to .mgz fles, the results look like the attached image.
How can I correct for this? We tried skullstripping in AFNI first t
